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View Structure Prediction Details

Protein: LSH5_ARATH
Organism: Arabidopsis thaliana
Length: 182 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSH5_ARATH.

Description E-value Query
Range
Subject
Range
LSH6_ARATH - Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1
275.0 [0..5] [164..17]

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Predicted Domain #1
Region A:
Residues: [1-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGETAAKAA ASSSSSPSRY ESQKRRDWNT FLQYLRNHKP PLNLSRCSGA HVLEFLKYLD  60
   61 QFGKTKVHAT ACPFFGQPNP PSQCTCPLKQ AWGSLDALIG RLRAAFEEIG GGLPESNPFA 120
  121 AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT 180
  181 TV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 87.920819
Match: PF04852.3
Description: No description for PF04852.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle