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View Structure Prediction Details

Protein: gi|15221986, gi|...
Organism: Arabidopsis thaliana
Length: 521 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15221986, gi|....

Description E-value Query
Range
Subject
Range
gi|21555078 - gi|21555078|gb|AAM63771.1| 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase, putative [Arabidopsis...
583.0 [0..1] [521..1]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSLTSKSI LGCTKPASSS FLPSELRRLS SPAVQISLHS QTRKNFRQSW GLKKSDLMLN  60
   61 GSEIRPVKVR ASVSTAEK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.69897
Match: 1dqsA
Description: Dehydroquinate synthase, DHQS
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [79-521]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASEIVLQPIR EISGLIKLPG SKSLSNRILL LAALSEGTTV VDNLLNSDDI NYMLDALKIL  60
   61 GLNVETHSEN NRAVVEGCGG VFPASIDSKS DIELYLGNAG TAMRPLTAAV TAAGGNASYV 120
  121 LDGVPRMRER PIGDLVVGLK QLGADVECTL GTNCPPVRVN ANGGLPGGKV KLSGSISSQY 180
  181 LTALLMAAPL ALGDVEIEIV DKLISVPYVE MTLKLMERFG VSAEHSESWD RFFVKGGQKY 240
  241 KSPGNAYVEG DASSASYFLA GAAITGETVT VEGCGTTSLQ GDVKFAEVLE KMGCKVSWTE 300
  301 NSVTVTGPSR DAFGMRHLRA IDVNMNKMPD VAMTLAVVAL FADGPTTIRD VASWRVKETE 360
  361 RMIAICTELR KLGATVEEGS DYCVITPPKK VKPAEIDTYD DHRMAMAFSL AACADVPITI 420
  421 NDPGCTRKTF PDYFQVLERI TKH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 132.0
Match: 2qfqA
Description: No description for 2qfqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle