YRC Public Data Repository - Protein Structure Prediction

Protein:	PGR5_ARATH
Organism:	Arabidopsis thaliana
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGR5_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21553741 - gi\|21553741\|gb\|AAM62834.1\| unknown [Arabidopsis thaliana]	238.0	[0..1]	[133..1]
gi\|51965122, gi\|... - gi\|51965122\|ref\|XP_507345.1\| PREDICTED OSJNBa0044E16.27 gene product [Oryza sativa (japonica cultiva... gi\|125562613 - gi\|125562613\|gb\|EAZ08061.1\| hypothetical protein OsI_30326 [Oryza sativa Indica Group]	165.0	[0..14]	[133..10]
gi\|67968361, gi\|... - gi\|67968361\|dbj\|BAE00074.1\| PGR5 [Zea mays], gi\|162461380\|ref\|NP_001105792.1\| pgr5 protein [Zea mays...	162.0	[0..19]	[133..11]
gi\|5902602 - gi\|5902602\|gb\|AAD55571.1\|AF110789_1 unknown [Volvox carteri f. nagariensis]	157.0	[0..31]	[133..42]
gi\|67968357 - gi\|67968357\|dbj\|BAE00072.1\| PGR5 [Amaranthus hybridus]	154.0	[0..1]	[133..3]
gi\|48093522 - gi\|48093522\|gb\|AAT40138.1\| unknown [Bassia scoparia]	149.0	[0..53]	[133..1]
gi\|67968363 - gi\|67968363\|dbj\|BAE00075.1\| PGR5 [Portulaca grandiflora]	141.0	[0..1]	[133..1]
gi\|67968359 - gi\|67968359\|dbj\|BAE00073.1\| PGR5 [Portulaca oleracea]	140.0	[0..1]	[133..1]
gi\|47026897 - gi\|47026897\|gb\|AAT08671.1\| unknown [Hyacinthus orientalis]	138.0	[0..55]	[133..1]
gi\|7470670 - pir\|\|S77542 hypothetical protein ssr2016 - Synechocystis sp. (strain PCC 6803) gi\|1652467, gi\|1... - gi\|1652467\|dbj\|BAA17389.1\| ssr2016 [Synechocystis sp. PCC 6803], gi\|16329981\|ref\|NP_440709.1\| hypoth...	117.0	[0..69]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAASISAIG CNQTLIGTSF YGGWGSSISG EDYQTMLSKT VAPPQQARVS RKAIRAVPMM  60
   61 KNVNEGKGLF APLVVVTRNL VGKKRFNQLR GKAIALHSQV ITEFCKSIGA DAKQRQGLIR 120
  121 LAKKNGERLG FLA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits