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View Structure Prediction Details

Protein: gi|15218379, gi|...
Organism: Arabidopsis thaliana
Length: 352 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15218379, gi|....

Description E-value Query
Range
Subject
Range
gi|92895786 - gi|92895786|gb|ABE92847.1| Protein prenyltransferase, alpha subunit [Medicago truncatula]
422.0 [0..2] [348..4]

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Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVPPRFRSV NSDEREFRSV LGPTGNKLQR KPPGMKLEKP MMEKTIIDSK DEKAKKPTTP  60
   61 ASPRTTLKQC SSLCSSILRK NSASMTASYS SDASSSCESS PLSVASSSSC KKVVRRSGSV 120
  121 SSTRKLSVGK EEEKVSGDCF ADG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.988
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [144-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKRCAWITPK ADPCYVAFHD EEWGVPVHDD KKLFELLCLS GALAELSWTD ILSRRHILRE  60
   61 VFMDFDPVAV AELNDKKLTA PGTAAISLLS EVKIRSILDN SRHVRKIIAE CGSLKKYMWN 120
  121 FVNNKPTQSQ FRYQRQVPVK TSKAEFISKD LVRRGFRSVS PTVIYSFMQA AGLTNDHLIG 180
  181 CFRYQDCCVD AETTTTTKAK KKNERESDK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.39794
Match: 2ofiA
Description: No description for 2ofiA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle