YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15235962, gi|...
Organism: Arabidopsis thaliana
Length: 185 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15235962, gi|....

Description E-value Query
Range
Subject
Range
gi|224881 - gi|224881|prf||1203245A protein 1b,pathogenesis related
PR1B_TOBAC - Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1
183.0 [0..22] [185..5]

Back

Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQKTLIFII IIIVISTPLP SLSFQIPSNR TPTTSTLIFS QDKALARNTI QQQFLRPHNI  60
   61 LRAKLRLPPL KWSNSLALYA SRWARTRRGD CKLIHSGGPY GENLFWGSGK GWTPRDAVAA 120
  121 WASEMKYYDR RTSHCKANGD CLHYTQLVWK KSSRIGCAIS FCKTGDTFII CNYDPPGNIV 180
  181 GQPPF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.39794
Match: 1cfeA
Description: P14A, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle