YRC Public Data Repository - Protein Structure Prediction

Protein:	UP3_ARATH
Organism:	Arabidopsis thaliana
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UP3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|110736982 - gi\|110736982\|dbj\|BAF00446.1\| hypothetical protein [Arabidopsis thaliana]	270.0	[0..39]	[263..1]
gi\|14192878 - gi\|14192878\|gb\|AAK55783.1\|AC079038_17 Hypothetical protein [Oryza sativa] gi\|34394189, gi\|... - gi\|50939169\|ref\|XP_479112.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|37731904\|g...	183.0	[0..1]	[254..1]
gi\|50939171, gi\|... - gi\|51963536\|ref\|XP_506456.1\| PREDICTED OSJNBb0018L13.12 gene product [Oryza sativa (japonica cultiva... gi\|218200001 - gi\|218200001\|gb\|EEC82428.1\| hypothetical protein OsI_26826 [Oryza sativa Indica Group]	176.0	[0..1]	[254..1]
gi\|32422261, gi\|... - gi\|32422261\|ref\|XP_331574.1\| predicted protein [Neurospora crassa], gi\|28920490\|gb\|EAA29856.1\| conse... gi\|85091826 - gi\|85091826\|ref\|XP_959092.1\| hypothetical protein NCU09182 [Neurospora crassa OR74A]	125.0	[0..13]	[142..27]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICARIRPLI SSPLAFTIST TKHSRINLRL LPRRSFSVMS SSTPQSQIIE HIVLFKTKDD  60
   61 ADSTKITSMI NNLNALAYLD QVLHISTSPL HRISSATAFT HVLHSRYESK EDLASYAAHP 120
  121 DHVRVVKESV LPICDDIMAV DWIAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.09691
Match:	1q4rA
Description:	Gene Product of At3g17210 from Arabidopsis Thaliana
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [146-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RIPGTVAPLP GSVAKLTLLK LKEDVADEAK SEITGVIKGL SEKFPGIDQI TVGENFSPAR  60
   61 AKGFSIASIA YFKDLSEMEA VDAQKELVNS QKDKVRDYVD STIVVEFVVP SSSQSSSL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.56
Match:	1q4rA
Description:	Gene Product of At3g17210 from Arabidopsis Thaliana
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits