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View Structure Prediction Details

Protein: TPPG_ARATH
Organism: Arabidopsis thaliana
Length: 377 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPPG_ARATH.

Description E-value Query
Range
Subject
Range
TPPF_ARATH - Probable trehalose-phosphate phosphatase F OS=Arabidopsis thaliana GN=TPPF PE=2 SV=1
238.0 [0..1] [377..1]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNINKTTP VLSDPTTPVS KTRLGSSFPS GRFMMNSRKK IPKLDDVRSN GWLDAMISSS  60
   61 PPRKRLVKDF NIEIAPEDDF SQRAWMLKYP SAITSFAHIA AQAKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.39794
Match: 1uqtA
Description: Trehalose-6-phosphate from E. coli bound with UDP-2-fluoro glucose.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [106-377]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKIAVFLDYD GTLSPIVDDP DRAIMSDAMR AAVKDVAKYF PTAIISGRSR DKVYQLVGLT  60
   61 ELYYAGSHGM DIMTPVNPNG SPEDPNCIKT TDQQGEEVNL FQPAKEFIPV IEEVYNNLVE 120
  121 ITKCIKGAKV ENHKFCTSVH YRNVDEKDWP LVAQRVHDHL KRYPRLRITH GRKVLEVRPV 180
  181 IEWNKGKAVE FLLESLGLSN NDEFLPIFIG DDKTDEDAFK VLREGNRGFG ILVSSVPKES 240
  241 NAFYSLRDPS EVKKFLKTLV KWGKMESSKT SF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.69897
Match: 1rkqA
Description: Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.92340854382984 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle