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View Structure Prediction Details

Protein: BPC1_ARATH
Organism: Arabidopsis thaliana
Length: 283 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BPC1_ARATH.

Description E-value Query
Range
Subject
Range
gi|39577662 - gi|39577662|gb|AAR28441.1| basic pentacysteine 1 [Arabidopsis thaliana]
507.0 [0..1] [283..1]
gi|83616242, gi|... - gi|83616242|gb|ABC25626.1| GAGA-binding transcriptional activator [Capsella rubella], gi|83616240|gb...
417.0 [0..1] [283..1]
gi|110267785 - gi|110267785|gb|ABG57059.1| GAGA-binding transcriptional activator [Cardamine pratensis]
416.0 [0..1] [283..1]
gi|83616232, gi|... - gi|83616234|gb|ABC25622.1| GAGA-binding transcriptional activator [Olimarabidopsis pumila], gi|83616...
414.0 [0..1] [283..1]
gi|20530716, gi|... - gi|255634795|gb|ACU17758.1| unknown [Glycine max], gi|20530716|gb|AAM27201.1|AF502431_1 GAGA-binding...
385.0 [0..1] [283..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDDGFRNWG YYEPAAASSF KGNLGLQLMS TIDRNTKPFL PGRESNLMIG SNGSYHSREQ  60
   61 DMNYSWINQP KDNKFFNMLP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISTPSYSNVL SETSGSNSIQ MIHQPVLNSS RFEENPIPPP APCEEQTGKK RKMRGSIATP  60
   61 TVPKAKKMR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [150-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPKEERDVTN NNVQQQQQRV KPVKKSVDLV INGVSMDISG LPVPVCTCTG TPQQCYRWGC  60
   61 GGWQSACCTT NISVYPLPMS TKRRGARISG RKMSQGAFKK VLEKLSTEGY SFGNAIDLKS 120
  121 HWARHGTNKF VTIR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 96.366532
Match: PF06217.2
Description: No description for PF06217.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle