YRC Public Data Repository - Protein Structure Prediction

Protein:	CCA11_ARATH
Organism:	Arabidopsis thaliana
Length:	460 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCA11_ARATH.

Description	E-value	Query Range	Subject Range
gi\|114599953 - gi\|114599953\|ref\|XP_517728.2\| PREDICTED: cyclin B1 [Pan troglodytes]	344.0	[0..3]	[459..107]
CCNB1, CGB1 - chorionic gonadotropin, beta polypeptide 1, cyclin B1 gi\|123990181 - gi\|123990181\|gb\|ABM83901.1\| cyclin B1 [synthetic construct]	336.0	[0..3]	[459..4]
gi\|60655945 - gi\|60655945\|gb\|AAX32536.1\| cyclin B1 [synthetic construct]	333.0	[0..4]	[459..5]
gi\|109077467 - gi\|109077467\|ref\|XP_001091533.1\| PREDICTED: cyclin B1 isoform 4 [Macaca mulatta]	332.0	[0..3]	[459..4]
gi\|1835260 - gi\|1835260\|emb\|CAA99990.1\| mitotic cyclin [Sesbania rostrata]	332.0	[0..7]	[455..2]
gi\|7438493, gi\|1... - pir\|\|T02966 cyclin A-type (clone 19) - common tobacco, gi\|1064927\|emb\|CAA63542.1\| cyclin A-like prot...	330.0	[0..4]	[459..3]
gi\|73949659, gi\|... - gi\|73988334\|ref\|XP_851164.1\| PREDICTED: similar to G2/mitotic-specific cyclin B1 isoform 1 [Canis fa...	329.0	[0..3]	[459..4]
gi\|51762951 - gi\|51762951\|ref\|XP_485921.1\| PREDICTED: similar to cyclin B1 isoform 1 [Mus musculus]	328.0	[0..3]	[459..4]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN  60
   61 SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.242	N/A	N/A	a.61.1	Retroviral matrix proteins
View	Download	0.206	N/A	N/A	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.206	N/A	N/A	a.35.1	lambda repressor-like DNA-binding domains

Predicted Domain #2

Region A:
Residues: [94-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPHKVASSPS KSDDGSVSMD ETRSSSDSYK SPQVEYIEND DVSAVVSIER KALSNLFITP  60
   61 NSETIDNYCS RDVLSDMKKM DKNQIVNIDS NNGDPQL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.212	c.3.1	FAD/NAD(P)-binding domain
View	Download	0.207	c.3.1	FAD/NAD(P)-binding domain

Predicted Domain #3

Region A:
Residues: [191-460]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CATFACDIYK HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY  60
   61 LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD NTYLKDEVLD 120
  121 MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH 180
  181 SPSLVAASAI FLAKYILDPT RRPWNSTLQH YTQYKAMELR GCVKDLQRLC STAHGSTLPA 240
  241 VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.09691
Match:	2jgzB
Description:	No description for 2jgzB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits