YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|67633730, gi\|...
Organism:	Arabidopsis thaliana
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|67633730, gi|....

Description	E-value	Query Range	Subject Range
gi\|114647760 - gi\|114647760\|ref\|XP_001136911.1\| PREDICTED: hypothetical protein [Pan troglodytes]	319.0	[0..1]	[277..148]
gi\|113423966 - gi\|113423966\|ref\|XP_001132949.1\| PREDICTED: similar to Ubiquitin-63E CG11624-PA, isoform A [Homo sap...	316.0	[0..1]	[277..162]
ubq-1 - status:Confirmed UniProt:Q8MYQ4 protein_id:AAM22069.2	315.0	[0..1]	[284..229]
gi\|7488781, gi\|1... - pir\|\|T12035 polyubiquitin 4.4 - kidney bean, gi\|1684855\|gb\|AAB36545.1\| ubiquitin-like protein [Phase...	312.0	[0..1]	[277..103]
RL402_TRYCR - Ubiquitin-60S ribosomal protein L40 OS=Trypanosoma cruzi PE=2 SV=1	309.0	[0..1]	[277..1]
gi\|19483857, gi\|... - gi\|62825885\|gb\|AAH94012.1\| Ubc protein [Mus musculus], gi\|26372121\|dbj\|BAB27296.2\| unnamed protein p...	309.0	[0..1]	[277..1]
gi\|73695428 - gi\|73695428\|gb\|AAI03478.1\| Ubc protein [Rattus norvegicus]	308.0	[0..1]	[277..1]
UBB_CAVPO - Polyubiquitin-B OS=Cavia porcellus GN=UBB PE=2 SV=1	308.0	[0..1]	[277..1]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMTVENESG STFSIDIGLQ DTVLTFKRKI EMTQRIPVSR QTIFFQGKLL EDHLDIFEWD  60
   61 ILQNPLLHLS ISPDDNPTQN QVPQSPSNPI HEFVKNQDSA EDKKNPVLLH QTGKPPLPPK 120
  121 SSPLTTENFS KNQHDRPVIT KMVPELLGPQ GTSPVTVGRR RNRDQEVQNR VSSSSDSVKE 180
  181 VINIPDTPAR KKTKNYPLKI TVMVQPFEET RRIQVEVNVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	1oqyA
Description:	Structure of the DNA repair protein hHR23a
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [221-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNVEVLRKEL VKMQERGELN LPHEGFFFIH KQDVLREDQS FMANRVAPGD TIEIFQGYVT  60
   61 YTGSLPRTVR KLSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.31
Match:	1yx5B
Description:	Solution Structure of S5a UIM-1/Ubiquitin Complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits