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View Structure Prediction Details

Protein: STP9_ARATH
Organism: Arabidopsis thaliana
Length: 517 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STP9_ARATH.

Description E-value Query
Range		 Subject
Range
gi|49527412 - gi|49527412|emb|CAG61052.1| unnamed protein product [Candida glabrata]
gi|50291337, gi|... - gi|50291337|ref|XP_448101.1| unnamed protein product [Candida glabrata], gi|49527412|emb|CAG61052.1|...
 336.0 [0..4] [516..98]

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Predicted Domain #1
Region A:
Residues: [1-517] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGAFVSEG GGGGNSYEGG VTVFVIMTCI VAAMGGLLFG YDLGISGGVT SMEEFLSKFF  60
   61 PEVDKQMHEA RRETAYCKFD NQLLQLFTSS LYLAALASSF VASAVTRKYG RKISMFVGGV 120
  121 AFLIGSLFNA FATNVAMLIV GRLLLGVGVG FANQSTPVYL SEMAPAKIRG ALNIGFQMAI 180
  181 TIGILIANLI NYGTSQMAKN GWRVSLGLAA VPAVIMVIGS FVLPDTPNSM LERGKYEQAR 240
  241 EMLQKIRGAD NVDEEFQDLC DACEAAKKVD NPWKNIFQQA KYRPALVFCS AIPFFQQITG 300
  301 INVIMFYAPV LFKTLGFADD ASLISAVITG AVNVVSTLVS IYAVDRYGRR ILFLEGGIQM 360
  361 IVSQIVVGTL IGMKFGTTGS GTLTPATADW ILAFICLYVA GFAWSWGPLG WLVPSEICPL 420
  421 EIRPAGQAIN VSVNMFFTFL IGQFFLTMLC HMKFGLFYFF GGMVAVMTVF IYFLLPETKG 480
  481 VPIEEMGRVW KQHPFWKRYM PDDAVIGGGE ENYVKEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.221849
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
glycerol transmembrane transporter activity 7.11654923455995 bayes_pls_golite062009
alcohol transmembrane transporter activity 6.7545566917184 bayes_pls_golite062009
polyol transmembrane transporter activity 6.7545566917184 bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity 5.74077413704789 bayes_pls_golite062009
transporter activity 4.09176719149278 bayes_pls_golite062009
substrate-specific transporter activity 3.59744164024479 bayes_pls_golite062009
transmembrane transporter activity 3.5865018981083 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 3.54194478414824 bayes_pls_golite062009
hexose phosphate transmembrane transporter activity 3.3746965264994 bayes_pls_golite062009
glucose-6-phosphate transmembrane transporter activity 3.3746965264994 bayes_pls_golite062009
sugar:hydrogen symporter activity 2.99050613058546 bayes_pls_golite062009
cation:sugar symporter activity 2.99050613058546 bayes_pls_golite062009
monosaccharide transmembrane transporter activity 2.63293544825311 bayes_pls_golite062009
carbohydrate transmembrane transporter activity 2.62141276633776 bayes_pls_golite062009
sugar transmembrane transporter activity 2.47557586092261 bayes_pls_golite062009
ion transmembrane transporter activity 2.21266150105753 bayes_pls_golite062009
solute:hydrogen symporter activity 2.10485633822652 bayes_pls_golite062009
cation transmembrane transporter activity 1.79369588808394 bayes_pls_golite062009
active transmembrane transporter activity 1.59419818573076 bayes_pls_golite062009
binding 1.46605775041083 bayes_pls_golite062009
secondary active transmembrane transporter activity 1.22264637452409 bayes_pls_golite062009
symporter activity 0.74591237387473 bayes_pls_golite062009
solute:cation symporter activity 0.74591237387473 bayes_pls_golite062009
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