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View Structure Prediction Details

Protein: gi|10176893, gi|...
Organism: Arabidopsis thaliana
Length: 541 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10176893, gi|....

Description E-value Query
Range
Subject
Range
gi|15241478, gi|... - gi|15241478|ref|NP_199252.1| FAD-binding domain-containing protein [Arabidopsis thaliana], gi|101768...
392.0 [0..1] [540..1]

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Predicted Domain #1
Region A:
Residues: [1-541]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSKPLPTI SCIIVSVLYF SFYCITPTSS SASIQDQFIN CVKRNTHVSF PLEKTLFTPA  60
   61 KNVSLFNQVL ESTAQNLQFL AKSMPKPGFI FRPIHQSQVQ ASIICSKKLG IHFRVRSGGH 120
  121 DFEALSYVSR IEKPFILLDL SKLKQINVDI ESNSAWVQPG ATLGELYYRI AEKSKIHGFP 180
  181 AGLCTSVGIG GYMTGGGYGT LMRKYGLAGD NVLDVKMVDA NGKLLDRAAM GEDLFWAIRG 240
  241 GGGASFGIVL AWKIKLVPVP KTVTVFTVTK TLEQDARLKT ISKWQQISSK IIEEIHIRVV 300
  301 LRAAGNDGNK TVTMTYLGQF LGEKGTLLKV MEKAFPELGL TQKDCTEMSW IEAALFHGGF 360
  361 PTGSPIEILL QLKSPLGKDY FKATSDFVKE PIPVIGLKGI FKRLIEGNTT FLNWTPYGGM 420
  421 MSKIPESAIP FPHRNGTLFK ILYYANWLEN DKTSSRKINW IKEIYNYMAP YVSSNPRQAY 480
  481 VNYRDLDFGQ NKNNAKVNFI EAKIWGPKYF KGNFDRLVKI KTKVDPENFF RHEQSIPPMP 540
  541 Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.39794
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle