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View Structure Prediction Details

Protein: CHX13_ARATH
Organism: Arabidopsis thaliana
Length: 831 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CHX13_ARATH.

Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSMFGRED TNSSQWGEVH GPFMLEEIVC QAQNMLTSRG IFMKSNPLKY ALPLLLLQMS  60
   61 VIIVTSRLIF RVLQPLKQGM ISAQVLTGVV LGPSFLGHNV IYMN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLPAGGKII IQTLSNVGFV IHLFLLGLKI DGSIIRKAGS KAILIGTASY AFPFSLGNLT  60
   61 IMFISKTMGL PSDVISCTSS AISLSSMTSF PVTTTVLAEL NILNSELGRL ATHCSMVCEV 120
  121 CSWFVALAFN LYTRDRTMTS LYALSMIIGL LLVIYFVFRP IIVWLTQRKT KSMDKKDVVP 180
  181 FFPVLLLLSI ASLSGEAMGV HAAFGAFWLG VSLPDGPPLG TELAAKLEMF ASNLFLPCFI 240
  241 AISGLQTNFF EITESHEHHV VMIEIILLIT YGCKFLGTAA ASAYCQTQIG DALCLAFLMC 300
  301 CQGIIEVYTT IVWKDAQVVD TECFNLVIIT ILFVTGISRF LVVYLYDPSK RYKSKSKRTI 360
  361 LNTRQHN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.522879
Match: 1zcdA
Description: Crystal structure of the Na+/H+ antiporter NhaA
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [472-553]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQLRLLLGLY NVENVPSMVN LLEATYPTRF NPISFFTLHL VELKGRAHAL LTPHHQMNKL  60
   61 DPNTAQSTHI VNAFQRFEQK YQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [554-831]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GALMAQHFTA AAPYSSINND ICTLALDKKA TLIVIPFHKQ YAIDGTVGQV NGPIRTINLN  60
   61 VLDAAPCSVA IFIDRGETEG RRSVLMTNTW QNVAMLFIGG KDDAEALALC MRMAEKPDLN 120
  121 VTMIHFRHKS ALQDEDYSDM SEYNLISDFK SYAANKGKIH YVEEIVRDGV ETTQVISSLG 180
  181 DAYDMVLVGR DHDLESSVLY GLTDWSECPE LGVIGDMLTS PDFHFSVLVV HQQQGDDLLA 240
  241 MDDSYKLPNV EHQKIGDTGI QQRFSAEEGF TTIDLGKR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.221849
Match: 2jaxA
Description: No description for 2jaxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle