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View Structure Prediction Details

Protein: CYC1B_ARATH
Organism: Arabidopsis thaliana
Length: 307 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYC1B_ARATH.

Description E-value Query
Range
Subject
Range
gi|92872511, gi|... - gi|92872511|gb|ABE81122.1| Cytochrome c, monohaem [Medicago truncatula], gi|140072168|gb|ABO84810.1|...
402.0 [0..2] [307..1]

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Predicted Domain #1
Region A:
Residues: [1-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST  60
   61 VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ QVCASCHSMS LISYRDLVGV 120
  121 AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS 180
  181 LVTKARHNGQ NYVFALLTGY RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG 240
  241 TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK 300
  301 LVLDVVN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 1ezvD
Description: Cytochrome bc1 domain; Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ubiquinol-cytochrome-c reductase activity 9.78686808279934 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 9.78686808279934 bayes_pls_golite062009
electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity 7.65479843528878 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 6.402093715172 bayes_pls_golite062009
electron carrier activity 5.89393941749361 bayes_pls_golite062009
oxidoreductase activity 4.80453374142732 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 3.95927872883558 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.81941996826271 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 3.28855051034616 bayes_pls_golite062009
cation transmembrane transporter activity 3.12657801391409 bayes_pls_golite062009
ion transmembrane transporter activity 2.97300461435278 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.64574194038684 bayes_pls_golite062009
substrate-specific transporter activity 2.51612623656281 bayes_pls_golite062009
electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity 1.96628396955281 bayes_pls_golite062009
binding 0.972223231507636 bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor 0.95569494562262 bayes_pls_golite062009
peroxidase activity 0.95569494562262 bayes_pls_golite062009
antioxidant activity 0.72039892017668 bayes_pls_golite062009
protein binding 0.180623301978971 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle