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View Structure Prediction Details

Protein: CSLD2_ARATH
Organism: Arabidopsis thaliana
Length: 1145 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CSLD2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNKHFDKS RSNLSNNSDI QEPGRPPAGH SVKFAQRTSS GRYINYSRDD LDSELGGQDF  60
   61 MSYTVHIPPT PDNQPMDPSI SQKVEEQYVA NSMFTGGFKS NTRAHLMHKV IE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEPNHPQMAG SKGSSCAIPG CDAKVMSDER GQDLLPCECD FKICRDCFID AVKTGGGICP  60
   61 GCKEPYKNTH LTDQVDENGQ QRPMLPGGGG SKMERRLSMV KSTNKSALMR SQTGDFDHNR 120
  121 WLFE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.39794
Match: 1weoA
Description: Solution structure of RING-finger in the catalytic subunit (IRX3) of cellulose synthase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [237-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTGTYGYGNA FWTKDGDFGS GKDGDGDGDG MGMEAQDLMS RPWRPLTRKL KIPAGVISPY  60
   61 RLLIFIRIVV LALFLTWRVK H

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [318-502]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNPDAVWLWG MSVVCELWFA LSWLLDQLPK LCPINRATDL QVLKEKFETP TASNPTGKSD  60
   61 LPGFDVFVST ADPEKEPPLV TANTILSILA AEYPVEKLSC YVSDDGGALL TFEAMAEAAS 120
  121 FANIWVPFCR KHAIEPRNPD SYFSLKRDPY KNKVKSDFVK DRRRVKREFD EFKVRVNSLP 180
  181 DSIRR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [503-716]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSDAYHAREE IKAMKMQRQN RDDEPMEPVK IPKATWMADG THWPGTWLTS ASDHAKGDHA  60
   61 GIIQVMLKPP SDEPLHGVSE GFLDLTDVDI RLPLLVYVSR EKRPGYDHNK KAGAMNALVR 120
  121 ASAIMSNGPF ILNLDCDHYI YNSEALREGM CFMMDRGGDR LCYVQFPQRF EGIDPSDRYA 180
  181 NHNTVFFDVN MRALDGLMGP VYVGTGCLFR RIAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.0
Match: 2z87A
Description: No description for 2z87A was found.

Predicted Domain #6
Region A:
Residues: [717-892]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGFNPPRSKD FSPSCWSCCF PRSKKKNIPE ENRALRMSDY DDEEMNLSLV PKKFGNSTFL  60
   61 IDSIPVAEFQ GRPLADHPAV KNGRPPGALT IPRELLDAST VAEAIAVISC WYEDKTEWGS 120
  121 RIGWIYGSVT EDVVTGYRMH NRGWKSVYCV TKRDAFRGTA PINLTDRLHQ VLRWAT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [893-1017]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSVEIFFSRN NALLASSKMK ILQRIAYLNV GIYPFTSIFL IVYCFLPALS LFSGQFIVQT  60
   61 LNVTFLVYLL IISITLCLLA LLEIKWSGIS LEEWWRNEQF WLIGGTSAHL AAVLQGLLKV 120
  121 VAGVE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1018-1073]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISFTLTSKSG GDDIDDEFAD LYMVKWTSLM IPPITIIMVN LIAIAVGFSR TIYSVV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1074-1145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQWSKLIGGV FFSFWVLAHL YPFAKGLMGR RGRTPTIVYV WSGLVAITIS LLWVAINPPA  60
   61 GNTEIGGNFS FP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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