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View Structure Prediction Details

Protein: MBD11_ARATH
Organism: Arabidopsis thaliana
Length: 254 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBD11_ARATH.

Description E-value Query
Range
Subject
Range
gi|24020878, gi|... - gi|50979202|ref|NP_001003352.1| neurofilament, heavy polypeptide 200kDa [Canis lupus familiaris], gi...
129.0 [0..5] [253..780]

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Predicted Domain #1
Region A:
Residues: [1-67]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGEEEVVSV ELPAPSSWKK LFYPNKVGSV KKTEVVFVAP TGEEISNRKQ LEQYLKSHPG  60
   61 NPAIAEF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 13.200659
Match: PF01429.10
Description: No description for PF01429.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [68-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DWTTSGTPRR SARISEKTKA TPSPDKEPPK KRGRTKSPVS KKDAEGEKSE GGGEENSHVK  60
   61 DTEMNPPEGI AENENVTDKN GSGETERVND AKENIVAEET PNAAPVQEEG ESMKEKALDS 120
  121 VDDKSKETDK EKDTGSIEKN SVDVEKKTVE ASDEKKNSEA ETRNHEENGL TTEAEGKEKT 180
  181 AEGEATG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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