YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2317902, gi\|1...
Organism:	Arabidopsis thaliana
Length:	642 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2317902, gi|1....

Description	E-value	Query Range	Subject Range
gi\|42571293 - gi\|42571293\|ref\|NP_973737.1\| nitroreductase family protein [Arabidopsis thaliana]	287.0	[0..1]	[536..1]
gi\|20907967, gi\|... - gi\|21229378\|ref\|NP_635300.1\| hypothetical protein MM_3276 [Methanosarcina mazei Go1], gi\|20907967\|gb...	267.0	[0..66]	[634..2]
gi\|53734818, gi\|... - gi\|67924211\|ref\|ZP_00517651.1\| hypothetical protein CwatDRAFT_2514 [Crocosphaera watsonii WH 8501], ...	261.0	[0..65]	[622..2]
gi\|71676246, gi\|... - gi\|71676246\|ref\|ZP_00673988.1\| hypothetical protein TeryDRAFT_1882 [Trichodesmium erythraeum IMS101]...	255.0	[0..70]	[620..25]
gi\|75908373, gi\|... - gi\|75908373\|ref\|YP_322669.1\| hypothetical protein Ava_2154 [Anabaena variabilis ATCC 29413], gi\|7570...	252.0	[0..70]	[622..7]
gi\|22293891, gi\|... - gi\|22297714\|ref\|NP_680961.1\| hypothetical protein tll0170 [Thermosynechococcus elongatus BP-1], gi\|2...	249.0	[0..66]	[623..3]
gi\|19915532, gi\|... - gi\|20090508\|ref\|NP_616583.1\| hypothetical protein MA1655 [Methanosarcina acetivorans C2A], gi\|199155...	248.0	[0..66]	[636..2]
gi\|17232376, gi\|... - gi\|17232376\|ref\|NP_488924.1\| hypothetical protein all4884 [Nostoc sp. PCC 7120], gi\|17134021\|dbj\|BAB... gi\|25531832 - pir\|\|AD2416 hypothetical protein all4884 [imported] - Nostoc sp. (strain PCC 7120)	248.0	[0..70]	[622..7]
gi\|48839308, gi\|... - gi\|73670753\|ref\|YP_306768.1\| hypothetical protein Mbar_A3308 [Methanosarcina barkeri str. Fusaro], g...	248.0	[0..67]	[635..3]
gi\|53688502 - gi\|53688502\|ref\|ZP_00110385.2\| COG0778: Nitroreductase [Nostoc punctiforme PCC 73102]	244.0	[0..70]	[622..7]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPRQRKGE AMMNPTISWR FASSTSLLSI PRTPKSAFIF AMTFSSSSSS SSSSSSVENP  60
   61 NKDDSSSSLE LVLKYHNQTK HSLNGYARGP RGLDWANQPN PFRRYLSAPL LPLQHPNH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.408	a.118.1	ARM repeat
View	Download	0.408	a.118.21	Description not found.
View	Download	0.406	a.133.1	Phospholipase A2, PLA2
View	Download	0.406	a.133.1	Phospholipase A2, PLA2
View	Download	0.381	c.54.1	IIA domain of mannose transporter, IIA-Man
View	Download	0.375	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View	Download	0.375	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View	Download	0.372	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View	Download	0.372	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain

Predicted Domain #2

Region A:
Residues: [119-388]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIDDDSDSPL YSTLFDSLPP PKPISLPTIS HLFYHSLALS AWKTTGSSTW PLRVNPSSGN  60
   61 LHPTEAYLIA PPIPSLSQSA FVSHYAPKEH SLEVRAHIPS SFFPNFFPEN SFLIGISSIF 120
  121 WREAWKYGER AFRYCNHDVG HAIAALSIAA ADLGWDLKLL DAFGADDLKR LMGLPEFQLP 180
  181 EGKGKAELPE IEFEHPDCLL LVFPNGTSRE HLNLDYLAIS SALRDFPSLE WTGNPNTLSK 240
  241 EHLCWDIIYR TAKAVEKPPL IYSTSSSSID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1bkjA
Description:	Flavin reductase P (NADPH:FMN oxidoreductase)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [389-642]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VASFTSSRAL FSHSSYNKLT VRQVVRTRRS AVDMDAVTCI DMSSFYQMLM HCLPSTGESQ  60
   61 KEQLALPFRA LPWDTAEVHL ALFVHRVSGL PKGLYLLVRN EDHLSDLKTA TRPEFEWTKP 120
  121 DGCPDNLPLY KLAEGDCQRL AKGLSCHQDI AGDGCFSLGM IARFEPALRE KGSWMYPRLF 180
  181 WETGVVGQVL YLEAHAMGIS ATGIGCYFDD PVHEVLGIND SSFQSLYHFT VGGPVVDKRI 240
  241 MTLPAYPGPT TTVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.30103
Match:	1kqbA
Description:	Oxygen-insensitive NAD(P)H nitroreductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits