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View Structure Prediction Details

Protein: CDKE1_ARATH
Organism: Arabidopsis thaliana
Length: 470 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDKE1_ARATH.

Description E-value Query
Range
Subject
Range
gi|110737227, gi... - gi|28973682|gb|AAO64158.1| putative cyclin-dependent kinase E1 [Arabidopsis thaliana], gi|110737227|...
397.0 [0..1] [470..1]

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Predicted Domain #1
Region A:
Residues: [1-374]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDGSSSRSN SSNSTSEKPE WLQQYNLVGK IGEGTYGLVF LARTKTPPKR PIAIKKFKQS  60
   61 KDGDGVSPTA IREIMLLREI SHENVVKLVN VHINFADMSL YLAFDYAEYD LYEIIRHHRD 120
  121 KVGHSLNTYT VKSLLWQLLN GLNYLHSNWI IHRDLKPSNI LVMGDAEEHG IVKIADFGLA 180
  181 RIYQAPLKPL SDNGVVVTIW YRAPELLLGS KHYTSAVDMW AVGCIFAELL TLKPLFQGAE 240
  241 AKSSQNPFQL DQLDKIFKIL GHPTMDKWPT LVNLPHWQND VQHIQAHKYD SVGLHNVVHL 300
  301 NQKSPAYDLL SKMLEYDPLK RITASQALEH EYFRMDPLPG RNAFVASQPM EKNVNYPTRP 360
  361 VDTNTDFEGT TSIN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.522879
Match: 2jgzA
Description: No description for 2jgzA was found.

Predicted Domain #2
Region A:
Residues: [375-470]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPQAVAAGNV AGNMAGAHGM GSRSMPRPMV AHNMQRMQQS QGMMAYNFPA QAGLNPSVPL  60
   61 QQQRGMAQPH QQQQLRRKDP GMGMSGYAPP NKSRRL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle