YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|11994472, gi|...
Organism: Arabidopsis thaliana
Length: 576 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11994472, gi|....

Description E-value Query
Range
Subject
Range
OCA2 - oculocutaneous albinism II
244.0 [0..31] [562..225]

Back

Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFPIGSHF APPHQLTKRH VIATSSPISI STRLPQNVSF SKVSGVTGST RLSKHGVLVR  60
   61 AEDKIRSSSS PSSLDEPIDE DLMDSSGLCD PLCSVDEPSS SYFEANYQPK TDIIKALAIL 120
  121 AAALTGTAAI NH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [133-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWVAANQDVA MALLFGIGYA GIIFEESLAF NKSGIGLLMA VSLWVVRSIG APSTEIAVLD  60
   61 LQHATAEVSE IVFFLLGAMT IVEIVDAHQG FKLVTDNITT RKPKTLLWVV GFVTFFLSSI 120
  121 LDNLTSTIVM VSLIRKLVPQ SEYRKLLGGV VVIAANAGGA WTPIGDVTTT MLWIHGQIST 180
  181 LPTMKDLFLP SVVSLAVPLA LMSLTSEVN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [342-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKEQDPKDVL ASEKMAPRGK LVFGVGLGAL VFVPVFKALT GLPPYMGILL GLGVLWILTD  60
   61 AIHYGESERQ KL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [414-576]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVPQALSRID TQGALFFLGI LLSVSSLEAA GILREIANYL DANIPNVELI ASAIGVVSAI  60
   61 IDNVPLVAAT MGMYDLTSFP QDSEFWQLIA FCAGTGGSML VIGSAAGVAF MGMEKVDFFW 120
  121 YFRKVSGFAF AGYAAGIAAY LAVHNLHFEI PTTVAQIPFL TGS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle