YRC Public Data Repository - Protein Structure Prediction

Protein:	RLA32_ARATH
Organism:	Arabidopsis thaliana
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLA32_ARATH.

Description	E-value	Query Range	Subject Range
gi\|38503544 - gi\|38503544\|gb\|AAR22559.1\| 60S acidic ribosomal protein P3 [Lactuca saligna]	125.0	[0..1]	[69..9]
RLA3_MAIZE - 60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3	118.0	[0..1]	[71..1]
gi\|38503542 - gi\|38503542\|gb\|AAR22558.1\| 60S acidic ribosomal protein P3 [Lactuca serriola]	118.0	[0..3]	[69..1]
gi\|38503536 - gi\|38503536\|gb\|AAR22555.1\| 60S acidic ribosomal protein P3 [Lactuca sativa]	118.0	[0..1]	[69..1]
RLA31_ARATH - 60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=3 SV=1	113.0	[0..1]	[120..1]
gi\|125525035 - gi\|125525035\|gb\|EAY73149.1\| hypothetical protein OsI_01022 [Oryza sativa Indica Group] gi\|56783875, gi\|... - gi\|56783875\|dbj\|BAD81287.1\| putative acidic ribosomal protein P3a [Oryza sativa Japonica Group], gi\|...	105.0	[0..1]	[69..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVFSFVCKS KGGEWTAKQH EGDLEASASS TYDLQRKLVQ TALSADSSGG VQSSFSLVSP  60
   61 TSAVFVVVIG GGGGGGFAAG GGAAAGGGGG GEAAAATKEE EKKKEESEEE EGDFGFDLFG 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.585027
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits