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View Structure Prediction Details

Protein: H2AV2_ARATH
Organism: Arabidopsis thaliana
Length: 136 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for H2AV2_ARATH.

Description E-value Query
Range
Subject
Range
gi|68432331 - gi|68432331|ref|XP_690287.1| PREDICTED: similar to ReO_6 [Danio rerio]
196.0 [0..1] [136..288]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA  60
   61 TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL AIRGDEELDT LIKGTIAGGG 120
  121 VIPHIHKSLV NKVTKD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.39794
Match: 1f66C
Description: Histone H2A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle