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View Structure Prediction Details

Protein: gi|15238039, gi|...
Organism: Arabidopsis thaliana
Length: 357 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15238039, gi|....

Description E-value Query
Range
Subject
Range
gi|21553991 - gi|21553991|gb|AAM63072.1| nuclear RNA binding protein A-like protein [Arabidopsis thaliana]
206.0 [0..1] [357..1]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLNPFDLL GDDAEDPSQL AVALSQKVEK AAAAVQPPKA AKFPTKPAPP SQAVRESRNA  60
   61 PQGGRGGTGG RGGFSRGRGN GGYNRDNRNN DAPGNENGFS GGYRRPSEDA DGASRGGSVG 120
  121 GYRVGGGREG PRRGGVANGE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [141-284]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGDVERPPRN YDRHSRTGHG TGMKRNGGGR GNWGTTEDDI PPTSEEPTTE VEKSPVAEKQ  60
   61 GGEDETPEAK KELTAEEKAQ KEAEEAEARE MTLEEYEKIL EEKKKALQAT KVEERKVDTK 120
  121 VFESMQQLSN KKNTDEEIFI KLGS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 50.19382
Match: PF04774.6
Description: No description for PF04774.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [285-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKEKRKDATE KAKKSLSINE FLKPADGKRY NGRGGGSRGR GGRGGRGEGG NQRYAKEAAA  60
   61 PAIGDTAQFP SLG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle