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View Structure Prediction Details

Protein: gi|5262222, gi|1...
Organism: Arabidopsis thaliana
Length: 532 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5262222, gi|1....

Description E-value Query
Range
Subject
Range
gi|77652412, gi|... - gi|91978598|ref|YP_571257.1| D-lactate dehydrogenase (cytochrome) [Rhodopseudomonas palustris BisB5]...
338.0 [0..50] [526..20]

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Predicted Domain #1
Region A:
Residues: [1-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFQSFFSSV LIFFTTSTLL LSIPHPVSAN RSNQSSFLQC LSLQLNDSNI VSKVIHTPND  60
   61 TSFSSVLASS IQNQRFSAPD VPKPVLILTP VQPSDVQSAV KCARRFGIHI RTRSGGHDYE 120
  121 GLSYVTHKPF VILDLRNLRS ITVDVDNRSV WVQTGATIGE LYYEIGKKNR TLAFPAGVCP 180
  181 TVGVGGHFSG GGYGTLLRKH GLAADHVIDA RVVDARGRIL ERREMGEDFF WAIRGGGGSS 240
  241 FCVVLSWKIG LINVPSTVTV FNVTKFSEQS ALKIIHRWQF VADKVSDDLF IRVMLQRYKN 300
  301 MVRASFPGLY LGSVKNLLKM VNKEFPELGL EEDDCTEMSW IESVIWFAEL GEEPINVLTK 360
  361 RTRASLAFKA KSDFVQEPMP KTAISKLWRR LQEPEAEHAQ LIFTPFGGKM SEIADYETPF 420
  421 PHRKGNIYEI QYLNYWRGDV KEKYMRWVER VYDDMSEFVA KSPRGAYINL RDLDLGMYVG 480
  481 VKRSKYEEGK SWGVKYFKNN FERLVRVKTS VDPSDFFCDE QSIPPFTFVE VI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.69897
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle