YRC Public Data Repository - Protein Structure Prediction

Protein:	TGD2_ARATH
Organism:	Arabidopsis thaliana
Length:	381 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TGD2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21553847 - gi\|21553847\|gb\|AAM62940.1\| unknown [Arabidopsis thaliana]	281.0	[0..19]	[381..1]
gi\|215768238, gi... - gi\|57899922\|dbj\|BAD87834.1\| ABC-type transport system-like [Oryza sativa Japonica Group], gi\|5789970...	206.0	[0..35]	[381..19]
gi\|116058230 - gi\|116058230\|emb\|CAL53419.1\| ABC-type transport system-like (ISS) [Ostreococcus tauri]	199.0	[0..40]	[381..100]
gi\|89317138, gi\|... - gi\|89342822\|ref\|ZP_01195055.1\| Mammalian cell entry [Mycobacterium flavescens PYR-GCK], gi\|89317138\|...	168.0	[0..38]	[380..25]
gi\|92910739, gi\|... - gi\|92910739\|ref\|ZP_01279514.1\| Mammalian cell entry [Mycobacterium sp. JLS], gi\|92431912\|gb\|EAS91248...	167.0	[0..56]	[377..2]
gi\|87123070, gi\|... - gi\|87123070\|ref\|ZP_01078921.1\| possible ABC transporter [Synechococcus sp. RS9917], gi\|86168790\|gb\|E...	165.0	[0..90]	[381..1]
gi\|90196805, gi\|... - gi\|90204045\|ref\|ZP_01206689.1\| Mammalian cell entry [Mycobacterium vanbaalenii PYR-1], gi\|90196805\|g...	160.0	[0..42]	[379..3]
gi\|85721925, gi\|... - gi\|85858834\|ref\|YP_461036.1\| ABC-type transport system involved in resistance to organic solvents, p...	160.0	[0..95]	[381..6]
gi\|33864154, gi\|... - gi\|33864154\|ref\|NP_895714.1\| putative ABC transporter [Prochlorococcus marinus str. MIT 9313], gi\|33...	160.0	[0..90]	[381..3]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGNPVIQVP SSLMPSSSMI ACPRVSPNGV PYLPPKPRTR HLVVRAASNS DAAHGQPSSD  60
   61 GGKNPLTVVL DVPRNIWRQT LKPLSDFGFG K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [92-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSIWEGGVGL FIVSGATLLA LSWAWLRGFQ MRSKFRKYQT VFELSHASGI CTGTPVRIRG  60
   61 VTVGTIIRVN PSLKNIEAVA EIEDDKIIIP RNSLVEVNQS GLLMETMIDI MPRNPIPEPS 120
  121 VGPLHPECGK EGLIVCDRQT IKGVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.657577
Match:	PF02470.11
Description:	No description for PF02470.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [237-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVSLDELVGI FTRIGREVEA IGVANTYSLA ERAASVIEEA RPLLKKIQAM AEDAQPLLSE  60
   61 FRDSGLLKEV ECLTRSLTQA SDDLRKVNSS IMTPENTELI QKSIYTLVYT LKNVESISSD 120
  121 ILGFTGDEAT RKNLKLLIKS LSRLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.999	N/A	N/A	a.216.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits