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View Structure Prediction Details

Protein: gi|88196753, gi|...
Organism: Arabidopsis thaliana
Length: 240 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|88196753, gi|....

Description E-value Query
Range
Subject
Range
gi|9502174 - gi|9502174|gb|AAF88022.1|AF264698_1 NDR1/HIN1-Like protein 2 [Arabidopsis thaliana]
276.0 [0..1] [240..1]

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Predicted Domain #1
Region A:
Residues: [1-240]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKQPYLNG AYYGPSIPPP PKAHRSYNSP GFGCCCFSCL GSCLRCCGCC ILSLICNILI  60
   61 AVAVILGVAA LILWLIFRPN AVKFYVADAN LNRFSFDPNN NLHYSLDLNF TIRNPNQRVG 120
  121 VYYDEFSVSG YYGDQRFGSA NVSSFYQGHK NTTVILTKIE GQNLVVLGDG ARTDLKDDEK 180
  181 SGIYRINAKL RLSVRFKFWF IKSWKLKPKI KCDDLKIPLG SSNSTGGFKF QPVQCDFDLS 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.66
Match: 1xo8A
Description: Solution structure of AT1g01470 from Arabidopsis Thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle