YRC Public Data Repository - Protein Structure Prediction

Protein:	NOP10_ARATH
Organism:	Arabidopsis thaliana
Length:	64 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP10_ARATH.

Description	E-value	Query Range	Subject Range
gi\|49121065, gi\|... - gi\|67902534\|ref\|XP_681523.1\| hypothetical protein AN8254.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	105.0	[0..1]	[60..1]
NO10_ARATH - (Q93XX8) Ribosome biogenesis protein Nop10	102.0	[0..1]	[64..1]
NOP10_DANRE - H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio GN=nop10 PE=3 SV=1	100.0	[0..1]	[59..1]
gi\|47847676, gi\|... - gi\|50910565\|ref\|XP_466771.1\| nucleolar RNA-binding Nop10p-like protein [Oryza sativa (japonica culti...	100.0	[0..1]	[64..195]
gi\|47213487 - gi\|47213487\|emb\|CAF91144.1\| unnamed protein product [Tetraodon nigroviridis]	100.0	[0..1]	[59..1]
gi\|73999753 - gi\|73999753\|ref\|XP_849017.1\| PREDICTED: similar to nucleolar protein family A, member 3 [Canis famil...	99.0	[0..1]	[59..103]
NOP10_YEAST - H/ACA ribonucleoprotein complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... NOP10 - Constituent of small nucleolar ribonucleoprotein particles containing H/ACA-type snoRNAs, which are ... gi\|151944017 - gi\|151944017\|gb\|EDN62310.1\| H/ACA-box snoRNPs component [Saccharomyces cerevisiae YJM789] gi\|190405854 - gi\|190405854\|gb\|EDV09121.1\| H/ACA-box snoRNPs component [Saccharomyces cerevisiae RM11-1a]	99.0	[0..1]	[58..1]
NOP10_DEBHA, NO1... - H/ACA ribonucleoprotein complex subunit 3 OS=Debaryomyces hansenii GN=NOP10 PE=3 SV=1, (Q6BQP3) Ribo... NOP10_DEBHA - H/ACA ribonucleoprotein complex subunit 3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JC...	99.0	[0..1]	[58..1]
gi\|38109602, gi\|... - gi\|39958397\|ref\|XP_364408.1\| hypothetical protein MGG_09253 [Magnaporthe grisea 70-15], gb\|EAA55446....	99.0	[0..1]	[63..1]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLQCYINEK GEKVYTTKKE SPLGLATESA HPARFSPDDK YSKQRVLLKK RFGLLPTQNA  60
   61 PLQY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1y2yA
Description:	Structural Characterization of Nop10p using Nuclear Magnetic Resonance Spectroscopy
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits