YRC Public Data Repository - Protein Structure Prediction

Protein:	OST1B_ARATH
Organism:	Arabidopsis thaliana
Length:	464 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OST1B_ARATH.

Description	E-value	Query Range	Subject Range
gi\|50754383 - gi\|50754383\|ref\|XP_414360.1\| PREDICTED: similar to Dolichyl-diphosphooligosaccharide--protein glycos...	631.0	[0..18]	[463..268]
gi\|37497110, gi\|... - gi\|37497110\|ref\|NP_922916.1\| ribophorin I [Danio rerio], gi\|23194245\|gb\|AAN15068.1\| ribophorin I [Da...	619.0	[0..2]	[463..6]
RPN1 - ribophorin I	619.0	[0..13]	[463..17]
gi\|55725354 - gi\|55725354\|emb\|CAH89541.1\| hypothetical protein [Pongo abelii] RPN1_PONAB - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Pongo abelii GN=RPN1 PE=...	617.0	[0..13]	[463..17]
gi\|114589051, gi... - gi\|114589053\|ref\|XP_516729.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|114589...	617.0	[0..13]	[463..17]
gi\|73984484 - gi\|73984484\|ref\|XP_848830.1\| PREDICTED: similar to Dolichyl-diphosphooligosaccharide--protein glycos...	617.0	[0..12]	[463..16]
RPN1_MACFA - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Macaca fascicularis GN=R... gi\|109098074 - gi\|109098074\|ref\|XP_001097494.1\| PREDICTED: ribophorin I [Macaca mulatta]	614.0	[0..12]	[463..16]
gi\|45361637, gi\|... - gi\|89272417\|emb\|CAJ82807.1\| ribophorin I [Xenopus tropicalis], gi\|45361637\|ref\|NP_989394.1\| hypothet...	610.0	[0..1]	[463..1]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARIGIFSV FVAVLLSISA FSSAQDLQIV NAERRIDLSS HIVKAFLTLK VENIGKDPAA  60
   61 EMLLAFPPTQ IKNLAMVQAL ATTGKKKKKT YLPLDVKPTE QPDAPNDTGY YRVTFISPLG 120
  121 PGETVSLEVL YILTHSLEPF PVEITQSESQ LVYYHDSAVI LSPYHVKQQT TFIKTPSTRV 180
  181 ESFTSIEPAN RAGKEIKYGP YENR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [205-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASYSYTPVII HFENNSPFAV VEELVREIEI SHWGSLQITE NYRLTHGGAR HKGVFSRVDY  60
   61 QSKRSVSGAS SFNALLAVLP PRVNSVYYRD EIGNISTSHL RTGFRKSELE FEPRYPLFGG 120
  121 WSATFIIGYR V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [336-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLEDYLFEAS DGRRYLNFTF GCPLVETIVN KLTIKVVLPE GSKDPSAVLP FTVNQELQVK  60
   61 YSYLDIVGRT VVVLQKDNVV PTHNVPFQVY YTFKPIYMLA EPFMLVSAFF LVFVASLAYV 120
  121 HIDLNIVRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits