YRC Public Data Repository - Protein Structure Prediction

Protein:	YIPL4_ARATH
Organism:	Arabidopsis thaliana
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIPL4_ARATH.

Description	E-value	Query Range	Subject Range
gi\|25367152, gi\|... - gi\|4895260\|gb\|AAD32844.1\|AC007658_3 unknown protein [Arabidopsis thaliana], pir\|\|D84825 hypothetical...	205.0	[0..1]	[121..1]
YIPL_SOLTU - Protein yippee-like OS=Solanum tuberosum PE=2 SV=1	202.0	[0..1]	[120..1]
gi\|28273361, gi\|... - gi\|50917987\|ref\|XP_469390.1\| putative zinc binding protein [Oryza sativa (japonica cultivar-group)],... gi\|218193579 - gi\|218193579\|gb\|EEC76006.1\| hypothetical protein OsI_13146 [Oryza sativa Indica Group]	199.0	[0..1]	[120..1]
gi\|114685320 - gi\|114685320\|ref\|XP_001159736.1\| PREDICTED: hypothetical protein [Pan troglodytes]	196.0	[0..3]	[109..254]
gi\|109462885 - gi\|109462885\|ref\|XP_001080016.1\| PREDICTED: similar to yippee-like 3 [Rattus norvegicus]	194.0	[0..3]	[109..166]
gi\|40255199, gi\|... - gi\|40255199\|ref\|NP_113665.2\| yippee-like 3 [Homo sapiens], gi\|30047791\|gb\|AAH50664.1\| Yippee-like 3 ...	192.0	[0..3]	[109..90]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVFMVDLE GNIYICKLCK THLSTDQDIM SKSFQCKNGR AYLFNNVVNV SVGEKEDRMM  60
   61 ITGLHNVVDI FCVGCGSNVG WKYEFAHEKS QKYKEGKSVL ELYKISGPHD SNDLVSDGDD 120
  121 A

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.97
Match:	1l1dA
Description:	C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits