YRC Public Data Repository - Protein Structure Prediction

Protein:	YMF19_ARATH
Organism:	Arabidopsis thaliana
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMF19_ARATH.

Description	E-value	Query Range	Subject Range
YMF19_BRANA - Putative ATP synthase protein YMF19 OS=Brassica napus GN=YMF19 PE=3 SV=1 gi\|8096227 - gi\|8096227\|dbj\|BAA96105.1\| orfB [Raphanus raphanistrum] gi\|419764, gi\|80... - gi\|8096225\|dbj\|BAA96104.1\| orfB [Raphanus sativus], gi\|419764\|pir\|\|S30091 hypothetical protein 158 -... gi\|14386 - gi\|14386\|emb\|CAA78272.1\| ORF158 (not yet identified) [Brassica sp.]	262.0	[0..1]	[158..1]
YMF19_RAPSA - Putative ATP synthase protein YMF19 OS=Raphanus sativus GN=YMF19 PE=3 SV=1	260.0	[0..1]	[158..1]
gi\|56806619, gi\|... - gi\|57013983\|ref\|YP_173455.1\| orfB protein [Nicotiana tabacum], gi\|56806619\|dbj\|BAD83520.1\| orfB prot...	246.0	[0..1]	[157..1]
YMF19_HELAN - Putative ATP synthase protein YMF19 OS=Helianthus annuus GN=YMF19 PE=3 SV=1	239.0	[0..1]	[157..1]
gi\|15705131, gi\|... - gi\|17063209\|gb\|AAL32513.1\| ATP synthase subunit 8 [Daucus carota], gi\|17063206\|gb\|AAL32511.1\| ATP sy...	239.0	[0..1]	[156..1]

Back

Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQLDKFTYF SQFFWLCLFF FTFYIFICND GDGVLGISRI LKLRNQLLSH RGKTIRSKDP  60
   61 NSLEDLLRKG FSTGVSYMYA SLFEVSQWCK AVDLLGKR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.886057
Match:	PF02326.6
Description:	No description for PF02326.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [99-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKITLISCFG EISGSRGMER NILYNISKSS PSNTGRWITC RNCRNDIMLI HVVHGQGSIK  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.552842
Match:	PF06449.2
Description:	No description for PF06449.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.930	N/A	N/A	d.17.1	Cystatin/monellin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits