YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: XTH13_ARATH
Organism: Arabidopsis thaliana
Length: 284 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XTH13_ARATH.

Description E-value Query
Range
Subject
Range
gi|29500899, gi|... - gi|29500899|emb|CAD87533.1| putative xyloglucan endotransglycosylase [Cucumis sativus], gi|29500891|...
358.0 [0..3] [283..1]

Back

Predicted Domain #1
Region A:
Residues: [1-284]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFTTKQSL LLLSLLLLIS LSAGSFYDNF DITWGNGRAN IVESGQLLTC TLDKISGSGF  60
   61 QSKKEYLFGK IDMKMKLVAG NSAGTVTAYY LSSKGETWDE IDFEFLGNVT GQPYVLHTNV 120
  121 FTGGKGNREM QFYLWFDPTA DFHTYTVLWN PLNIIFLVDG IPIRVFKNNE ANGVAYPKSQ 180
  181 PMKIYSSLWE ADDWATQGGK VKTDWTNAPF SASYKSFNDV DCCSRTSLLN WVTCNANSNS 240
  241 WMWTTLNSNQ YGQMKWVQDD YMIYNYCTDF KRFPQGLPTE CNLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.522879
Match: 1umzA
Description: Xyloglucan endotransglycosylase in complex with the xyloglucan nonasaccharide XLLG.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle