YRC Public Data Repository - Protein Structure Prediction

Protein:	WRK75_ARATH
Organism:	Arabidopsis thaliana
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WRK75_ARATH.

Description	E-value	Query Range	Subject Range
gi\|218189011 - gi\|218189011\|gb\|EEC71438.1\| hypothetical protein OsI_03639 [Oryza sativa Indica Group] gi\|215766332, gi... - gi\|58042745\|gb\|AAW63716.1\| WRKY23 [Oryza sativa (japonica cultivar-group)], gi\|46394300\|tpg\|DAA05088...	159.0	[0..23]	[145..132]
gi\|1432058, gi\|7... - pir\|\|S72444 DNA-binding protein WRKY2 - parsley (fragment), gi\|1432058\|gb\|AAC49529.1\| WRKY2	159.0	[0..14]	[141..83]
gi\|6692107 - gi\|6692107\|gb\|AAF24572.1\|AC007764_14 F22C12.23 [Arabidopsis thaliana]	157.0	[0..41]	[143..88]
gi\|1076685, gi\|4... - gi\|484261\|dbj\|BAA06278.1\| SPF1 protein [Ipomoea batatas], pir\|\|S51529 SPF1 protein - sweet potato	157.0	[0..10]	[138..328]
gi\|927025, gi\|74... - gi\|927025\|gb\|AAC37515.1\| SPF1-like DNA-binding protein [Cucumis sativus], pir\|\|JC6203 SP8 binding pr...	154.0	[0..22]	[139..351]
gi\|77403677 - gi\|77403677\|dbj\|BAE46417.1\| double WRKY type transfactor [Solanum tuberosum]	153.0	[0..11]	[138..304]
gi\|42374817 - gi\|42374817\|gb\|AAS13440.1\| WRKY6 [Nicotiana attenuata]	153.0	[0..3]	[133..325]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGYDNGSLY APFLSLKSHS KPELHQGEEE SSKVRSEGCS KSVESSKKKG KKQRYAFQTR  60
   61 SQVDILDDGY RWRKYGQKAV KNNKFPRSYY RCTYGGCNVK KQVQRLTVDQ EVVVTTYEGV 120
  121 HSHPIEKSTE NFEHILTQMQ IYSSF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1wj2A
Description:	Solution Structure of the C-terminal WRKY Domain of AtWRKY4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits