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View Structure Prediction Details

Protein: WRK70_ARATH
Organism: Arabidopsis thaliana
Length: 294 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WRK70_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592990 - gi|21592990|gb|AAM64939.1| DNA-binding protein-like [Arabidopsis thaliana]
306.0 [0..1] [294..1]
gi|7406995 - gi|7406995|gb|AAF61863.1|AF193770_1 DNA-binding protein 3 [Nicotiana tabacum]
198.0 [0..4] [285..8]
gi|3420906 - gi|3420906|gb|AAC31956.1| zinc finger protein; WRKY1 [Pimpinella brachycarpa]
169.0 [0..8] [289..235]
gi|46394292 - gi|46394292|tpg|DAA05084.1| TPA: TPA_inf: WRKY transcription factor 19 [Oryza sativa (japonica culti...
168.0 [0..11] [289..15]
gi|7488948, gi|1... - pir||S72443 DNA-binding protein WRKY1 - parsley, gi|1431872|gb|AAC49527.1| WRKY1
167.0 [0..8] [289..235]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTNKAKKLK VMNQLVEGHD LTTQLQQLLS QPGSGLEDLV AKILVCFNNT ISVLDTFEPI  60
   61 SSSSSLAAVE GSQNASCDND GKFEDSGDSR KRLGPVKGKR GC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKRKKRSETC TIESTILEDA FSWRKYGQKE ILNAKFPRSY FRCTHKYTQG CKATKQVQKV  60
   61 ELEPKMFSIT YIGNHTCNTN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.09691
Match: 1wj2A
Description: Solution Structure of the C-terminal WRKY Domain of AtWRKY4
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [183-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AETPKSKTCD HHDEIFMDSE DHKSPSLSTS MKEEDNPHRH HGSSTENDLS LVWPEMVFEE  60
   61 DYHHQASYVN GKTSTSIDVL GSQDLMVFGG GGDFEFSENE HFSIFSSCSN LS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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