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View Structure Prediction Details

Protein: WRK41_ARATH
Organism: Arabidopsis thaliana
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WRK41_ARATH.

Description E-value Query
Range
Subject
Range
gi|24762209, gi|... - gi|30681651|ref|NP_849358.1| WRKY41; transcription factor [Arabidopsis thaliana], gi|24762209|gb|AAN...
237.0 [0..1] [313..1]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMMNWERRS LLNELIHGLK AAKQLQGSSS PSLSASSSYL TTEIKENLLH NIVSSFKKAI  60
   61 LMLNGSTTQH NPTIELAPDP LAHPGKVPGS PASITGNPRS EEFFNVRSKE 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNLSSKKRKM LPKWTEQVRI SPERGLEGPH DDIFSWRKYG QKDILGAKFP RSYYRCTFRN  60
   61 TQYCWATKQV QRSDGDPTIF EVTYRGTHTC SQGIP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 1wj2A
Description: Solution Structure of the C-terminal WRKY Domain of AtWRKY4
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [206-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPEKRETKPK HTVAVNYQNL RASLTVRTGG LGSEAFSFPV TSPLYTYESI NGGGTFYHHV  60
   61 GSSGPSDFTG LISTNTSTGS SPIFDVNFQF DPTAEINTGF PTFFHNSI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle