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View Structure Prediction Details

Protein: WRK18_ARATH
Organism: Arabidopsis thaliana
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WRK18_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593627, gi|... - gi|21593627|gb|AAM65594.1| WRKY DNA-binding protein 18 [Arabidopsis thaliana], gi|13506731|gb|AAK283...
315.0 [0..1] [310..1]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGSSFLDIS LDLNTNPFSA KLPKKEVSVL ASTHLKRKWL EQDESASELR EELNRVNSEN  60
   61 KKLTEMLARV CESYNELHNH LEKLQSR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.968
Match: 1hjbA
Description: C/ebp beta
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [88-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSPEIEQTDI PIKKRKQDPD EFLGFPIGLS SGKTENSSSN EDHHHHHQQH EQKNQLLSCK  60
   61 RPVTDSFNKA KVSTVYVPTE TSDTSLTVKD GFQWRKYGQK VTRDNPSPRA YFRCSFAPSC 120
  121 PVKKKVQRSA EDPSLLVATY EGTHNHLGPN ASEGDATSQG GSSTVTLDLV NGCHRLALEK 180
  181 NERDNTMQEV LIQQMASSLT KDSKFTAALA AAISGRLMEQ SRT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.39794
Match: 1wj2A
Description: Solution Structure of the C-terminal WRKY Domain of AtWRKY4
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle