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View Structure Prediction Details

Protein: VATL2_ARATH
Organism: Arabidopsis thaliana
Length: 165 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATL2_ARATH.

Description E-value Query
Range
Subject
Range
gi|109127279 - gi|109127279|ref|XP_001085529.1| PREDICTED: similar to Vacuolar ATP synthase 16 kDa proteolipid subu...
175.0 [0..26] [158..288]

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Predicted Domain #1
Region A:
Residues: [1-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV  60
   61 MAGVLGIYGL IIAVIISTGI NPKAKSYYLF DGYAHLSSGL ACGLAGLSAG MAIGIVGDAG 120
  121 VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.39794
Match: 2bl2A
Description: The membrane rotor of the V-type ATPase from Enterococcus hirae
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle