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View Structure Prediction Details

Protein: VSP2_ARATH
Organism: Arabidopsis thaliana
Length: 265 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VSP2_ARATH.

Description E-value Query
Range
Subject
Range
gi|21537241 - gi|21537241|gb|AAM61582.1| vegetative storage protein Vsp2 [Arabidopsis thaliana]
316.0 [0..1] [265..1]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILSLSLLL LLAATVSASV PGLIELVDSK TIFGNVAELL EKEKLSINYA NCRSWHLGVE  60
   61 TSNIIDFDTV 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [71-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PANCKDYVED YLITSKQYQY DSKTVCKEAY FYAKGLALKN DTVNVWIFDL DDTLLSSIPY  60
   61 YAKYGYGTEK TDPGAYWLWL GTGASTPGLP EALHLYQNII ELGIEPIILS DRWKLWKNVT 120
  121 LDNLEAAGVT YWKHLILKPN GSNLRQVVYK SKVRKSLVKK GYNIVGNIGD QWADLVEDTP 180
  181 GRVFKLPNPL YYVPS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.69897
Match: 2hlkA
Description: No description for 2hlkA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle