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View Structure Prediction Details

Protein: VATD_ARATH
Organism: Arabidopsis thaliana
Length: 261 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATD_ARATH.

Description E-value Query
Range
Subject
Range
gi|5360953, gi|2... - gi|5360953|emb|CAB46439.1| v-ATPase subunit D [Arabidopsis thaliana], gi|25529226|pir||T52636 H+-tra...
288.0 [0..1] [261..1]

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Predicted Domain #1
Region A:
Residues: [1-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG  60
   61 DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT ENIAGVKLPK FDHFSEGETK 120
  121 NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP 180
  181 KLENTISYIK GELDELERED FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI 240
  241 SINAARNFLV GGAEKDSDII F

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 72.619789
Match: PF01813.8
Description: No description for PF01813.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle