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View Structure Prediction Details

Protein: VATA_ARATH
Organism: Arabidopsis thaliana
Length: 623 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATA_ARATH.

Description E-value Query
Range
Subject
Range
gi|60592632 - gi|60592632|dbj|BAD90912.1| vacuolar H+-ATPase catalytic subunit [Pyrus communis]
654.0 [0..1] [623..1]

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Predicted Domain #1
Region A:
Residues: [1-623]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL  60
   61 EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN IFDGIQRPLK TIARISGDVY 120
  121 IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY 180
  181 IAPAGQYSLK DTVIELEFQG IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF 240
  241 PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL 300
  301 PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA 360
  361 LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG PERNGSVTIV GAVSPPGGDF 420
  421 SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT 480
  481 KAREVLQRED DLNEIVQLVG KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS 540
  541 VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL 600
  601 VEKFKKLYDD LNAGFRALED ETR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 154.0
Match: 1vdzA
Description: Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle