YRC Public Data Repository - Protein Structure Prediction

Protein:	VATG3_ARATH
Organism:	Arabidopsis thaliana
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATG3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|109498722 - gi\|109498722\|ref\|XP_001065881.1\| PREDICTED: similar to ATPase, H+ transporting, V1 subunit G, isofor...	122.0	[0..2]	[103..104]
gi\|50911849, gi\|... - gi\|50911849\|ref\|XP_467332.1\| putative Vacuolar ATP synthase subunit G 1 [Oryza sativa (japonica cult...	109.0	[0..4]	[105..66]
VATG1_BOVIN - V-type proton ATPase subunit G 1 OS=Bos taurus GN=ATP6V1G1 PE=1 SV=3	98.0	[0..3]	[103..1]
VATG1_MOUSE - V-type proton ATPase subunit G 1 OS=Mus musculus GN=Atp6v1g1 PE=1 SV=3	98.0	[0..3]	[103..1]
gi\|109149627, gi... - gi\|109149627\|ref\|XP_001084453.1\| PREDICTED: similar to vacuolar H+ ATPase G1 [Macaca mulatta], gi\|10... CCDS6807.1_1 - null	97.0	[0..3]	[103..1]
ATP6V1G1 - ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 gi\|55632251 - gi\|55632251\|ref\|XP_528400.1\| PREDICTED: similar to vacuolar H(+)-ATPase subunit isoform 2 [Pan trogl...	96.0	[0..3]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLRGQGGI QMLLTAEQEA GRIVSAARTA KLARMKQAKD EAEKEMEEYR SRLEEEYQTQ  60
   61 VSGTDQEADA KRLDDETDVR ITNLKESSSK VSKDIVKMLI KYVTTTAA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.05061
Match:	PF03179.6
Description:	No description for PF03179.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.927	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.924	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.924	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.877	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.848	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.848	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.844	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.844	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.819	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.809	N/A	N/A	a.60.10	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits