YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: VA722_ARATH
Organism: Arabidopsis thaliana
Length: 221 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VA722_ARATH.

Description E-value Query
Range
Subject
Range
VA726_ARATH - Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2
267.0 [0..1] [220..1]

Back

Predicted Domain #1
Region A:
Residues: [1-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE  60
   61 NGFTYCVVAV DSAGRQIPMA FLERVKEDFN KRYGGGKAAT AQANSLNKEF GSKLKEHMQY 120
  121 CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG 180
  181 TQMRRKMWFQ NMKIKLIVLA IIIALILIII LSICGGFNCG K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.045757
Match: 2nupC
Description: No description for 2nupC was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle