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View Structure Prediction Details

Protein: VA714_ARATH
Organism: Arabidopsis thaliana
Length: 221 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VA714_ARATH.

Description E-value Query
Range
Subject
Range
VA713_ARATH - Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1
243.0 [0..1] [219..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIVYAVVAR GTVVLAEFSA VTGNTGAVVR RILEKLSPEI SDERLCFSQD RYIFHILRSD  60
   61 GLTFLCMAND TFGRRVPFSY LEEIHMRFMK NYGKVAHNAP AYAMNDEFSR VLHQQMEFFS 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.045757
Match: 2dmwA
Description: No description for 2dmwA was found.

Predicted Domain #2
Region A:
Residues: [121-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDSS FHFRKQSKRL  60
   61 RRALWMKNAK LLVLLTCLIV FLLYIIIASF CGGITLPSCR S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 1sfcA
Description: Synaptobrevin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle