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View Structure Prediction Details

Protein: VP281_ARATH
Organism: Arabidopsis thaliana
Length: 209 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VP281_ARATH.

Description E-value Query
Range
Subject
Range
gi|33416656, gi|... - gi|33416656|gb|AAH56011.1| Vps28-prov protein [Xenopus laevis], gi|148234793|ref|NP_001080785.1| vac...
gi|62858721, gi|... - gi|89266860|emb|CAJ82587.1| vacuolar protein sorting 28 (yeast) [Xenopus tropicalis], gi|62858721|re...
348.0 [0..2] [206..23]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVKLWNDKR EREMYENFAE LYAIIKATEK LEKAYIRDLI SPSEYETECQ KLIVHFKTLS  60
   61 ASLKDMVPNI ERFAETYKMD CSAAVYRLVT SGVPATVEHR AAAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.154902
Match: 2cazB
Description: No description for 2cazB was found.

Predicted functions:

Term Confidence Notes
binding 1.84486828479515 bayes_pls_golite062009
protein binding 1.057045320917 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [105-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASTSSSASVV AECVQNFITS MDSLKLNMVA VDQVYPLLSD LSASLNKLSI LPPDFEGKIK  60
   61 MKEWLLRLSK MGASDELTEQ QARQLHFDLE SSYNSFMAAL PNAGN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.522879
Match: 2j9wA
Description: No description for 2j9wA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle