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View Structure Prediction Details

Protein: UTP11_ARATH
Organism: Arabidopsis thaliana
Length: 228 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTP11_ARATH.

Description E-value Query
Range
Subject
Range
gi|31209297, gi|... - gi|31209297|ref|XP_313615.1| ENSANGP00000013368 [Anopheles gambiae str. PEST], gi|30176757|gb|EAA091...
AGAP004336-PA - UTP11-like, U3 small nucleolar ribonucleoprotein|protein_coding|2R:54821708:54822466:1|gene:AGAP0043...
203.0 [0..1] [228..1]

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Predicted Domain #1
Region A:
Residues: [1-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLRNAIPR PAHKERSQPE ARKRFGILEK HKDYIIRANA YHKKQETLKI LRQKAAFKNP  60
   61 DEFNFKMINS KTVDGRHRPK DEVNKYSAEE LMIMKTQDIG YVFQKWQSEK NKIDKLTASL 120
  121 QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR 180
  181 AKDLEKLYTD MSMQKELQKK GRKRKLRDDE LLNPNGKAVY KWRADRKR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.16
Match: 1rh1A
Description: crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle