YRC Public Data Repository - Protein Structure Prediction

Protein:	SF3BA_ARATH
Organism:	Arabidopsis thaliana
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SF3BA_ARATH.

Description	E-value	Query Range	Subject Range
gi\|76780360 - gi\|76780360\|gb\|AAI06479.1\| MGC131202 protein [Xenopus laevis] gi\|62858321, gi\|... - gi\|62858321\|ref\|NP_001016441.1\| splicing factor 3b, subunit 5, 10kDa [Xenopus (Silurana) tropicalis]...	167.0	[0..4]	[87..2]
gi\|49904601, gi\|... - gi\|50540016\|ref\|NP_001002478.1\| splicing factor 3b, subunit 5 [Danio rerio], gi\|49904601\|gb\|AAH76334...	167.0	[0..4]	[87..2]
ENSCJAT00000043249 - null HGNC:21083\|Ensem... - factor 3b, subunit 5, 10kDa, factor 3b, subunit 5, 10kDa tr\|G1SVT3\|G1SVT3... - pep:novel chromosome:oryCun2:12:134817252:134817509:-1 gene:ENSOCUG00000008752 transcript:ENSOCUT000... tr\|M3VVN9\|M3VVN9... - Splicing factor 3b subunit 5 OS=Felis catus GN=SF3B5 PE=4 SV=1 CCDS5204.1_1 - null gi\|109072487 - gi\|109072487\|ref\|XP_001087950.1\| PREDICTED: similar to SF3b10 [Macaca mulatta] gi\|149744119 - gi\|149744119\|ref\|XP_001502492.1\| PREDICTED: similar to SF3b10 [Equus caballus] gi\|126310653, gi... - gi\|126310653\|ref\|XP_001370624.1\| PREDICTED: similar to Splicing factor 3b, subunit 5, 10kDa [Monodel... gi\|114609648, gi... - gi\|114609648\|ref\|XP_001172714.1\| PREDICTED: SF3b10 isoform 2 [Pan troglodytes], gi\|114609646\|ref\|XP_... gi\|73946096 - gi\|73946096\|ref\|XP_854535.1\| PREDICTED: similar to SF3b10 [Canis familiaris] gi\|60655303, gi\|... - gi\|60655303\|gb\|AAX32215.1\| splicing factor 3b subunit 5 [synthetic construct], gi\|117644966\|emb\|CAL3... SF3B5 - splicing factor 3b, subunit 5, 10kDa SF3B5_BOVIN - Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1	165.0	[0..4]	[87..2]
gi\|68051667 - gi\|68051667\|gb\|AAY85097.1\| IP03424p [Drosophila melanogaster]	163.0	[0..5]	[87..8]
gi\|108877467, gi... - gi\|157114059\|ref\|XP_001657963.1\| hypothetical protein AaeL_AAEL006688 [Aedes aegypti], gi\|108877467\|...	162.0	[0..5]	[87..3]
gi\|110755305 - gi\|110755305\|ref\|XP_001120310.1\| PREDICTED: similar to Probable splicing factor 3B subunit 5 (SF3b5)...	162.0	[0..5]	[87..3]
AGAP011907-PA - splicing factor 3B subunit 5\|protein_coding\|3L:34829904:34830161:-1\|gene:AGAP011907 gi\|157013327, gi... - gi\|58394255\|ref\|XP_320622.2\| ENSANGP00000021330 [Anopheles gambiae str. PEST], gi\|55234779\|gb\|EAA001...	162.0	[0..5]	[87..3]
SF3BB_ARATH - Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1	161.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQASDRFNIN SQLEHLQAKY VGTGHADLSR FEWTVNIQRD SYASYIGHYP MLSYFAIAEN  60
   61 ESIGRERYNF MQKMLLPCGL PPEREDE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	65.79588
Match:	PF07189.2
Description:	No description for PF07189.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.723	N/A	N/A	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain
View	Download	0.723	N/A	N/A	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain
View	Download	0.690	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.690	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.646	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.646	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.604	N/A	N/A	a.7.8	GAT domain
View	Download	0.534	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.476	N/A	N/A	a.7.8	GAT domain
View	Download	0.447	N/A	N/A	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.349	N/A	N/A	a.159.1	Protein serine/threonine phosphatase 2C, C-terminal domain
View	Download	0.284	N/A	N/A	d.54.1	Enolase N-terminal domain-like
View	Download	0.276	N/A	N/A	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.252	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits