YRC Public Data Repository - Protein Structure Prediction

Protein:	TT8_ARATH
Organism:	Arabidopsis thaliana
Length:	518 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TT8_ARATH.

Description	E-value	Query Range	Subject Range
gi\|11121434 - gi\|11121434\|emb\|CAC14865.1\| transparent testa 8 [Arabidopsis thaliana]	402.0	[0..1]	[518..1]
gi\|100921, gi\|16... - gi\|22195\|emb\|CAA40544.1\| regulatory protein [Zea mays], gi\|162463519\|ref\|NP_001105706.1\| colored pla...	345.0	[0..1]	[514..1]
gi\|46254673 - gi\|46254673\|gb\|AAS86269.1\| myc-like anthocyanin regulatory protein [Cornus cf. canadensis Xiang and ...	335.0	[0..3]	[515..2]
gi\|46254725 - gi\|46254725\|gb\|AAS86295.1\| myc-like anthocyanin regulatory protein [Cornus unalaschkensis]	335.0	[0..3]	[515..2]
gi\|46254747 - gi\|46254747\|gb\|AAS86306.1\| myc-like anthocyanin regulatory protein [Cornus suecica]	335.0	[0..3]	[515..2]
gi\|46254691 - gi\|46254691\|gb\|AAS86278.1\| myc-like anthocyanin regulatory protein [Cornus canadensis]	334.0	[0..3]	[515..2]

Back

Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK  60
   61 TRKTTQPAEV TAEEAALERS QQLRELYETL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [91-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAGESTSEAR ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV  60
   61 DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF FYDHCKTNPK 120
  121 PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT 180
  181 HMDMMNLMEE GGNYSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [287-435]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVTTLLMSHP TSLLSDSVST SSYIQSSFAT WRVENGKEHQ QVKTAPSSQW VLKQMIFRVP  60
   61 FLHDNTKDKR LPREDLSHVV AERRRREKLN EKFITLRSMV PFVTKMDKVS ILGDTIAYVN 120
  121 HLRKRVHELE NTHHEQQHKR TRTCKRKTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	1am9A
Description:	SREBP-1a
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [436-518]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEVEVSIIEN DVLLEMRCEY RDGLLLDILQ VLHELGIETT AVHTSVNDHD FEAEIRAKVR  60
   61 GKKASIAEVK RAIHQVIIHD TNL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits