YRC Public Data Repository - Protein Structure Prediction

Protein:	TOCC_ARATH
Organism:	Arabidopsis thaliana
Length:	488 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TOCC_ARATH.

Description	E-value	Query Range	Subject Range
gi\|80971690, gi\|... - gi\|80971690\|gb\|ABB52816.1\| tocopherol cyclase [Helianthus annuus], gi\|80971688\|gb\|ABB52815.1\| tocoph...	727.0	[0..1]	[488..1]
gi\|33188419 - gi\|33188419\|gb\|AAP97931.1\| tocopherol cyclase [Eucalyptus gunnii]	712.0	[0..16]	[488..27]
gi\|47078321 - gi\|47078321\|gb\|AAT09809.1\| tocopherol cyclase [Solanum tuberosum]	712.0	[0..27]	[488..41]
TOCC_MAIZE - Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1	705.0	[0..13]	[488..2]
gi\|218190483 - gi\|218190483\|gb\|EEC72910.1\| hypothetical protein OsI_06739 [Oryza sativa Indica Group] TOCC_ORYSJ - Probable tocopherol cyclase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE1 PE=2 SV=1	694.0	[0..59]	[488..44]
gi\|91694297 - gi\|91694297\|gb\|ABE41800.1\| tocopherol cyclase [Triticum aestivum]	673.0	[0..71]	[488..53]
gi\|7270224, gi\|7... - gi\|7486416\|pir\|\|T04448 hypothetical protein F4D11.30 - Arabidopsis thaliana, gi\|7270224\|emb\|CAB79994...	649.0	[0..82]	[488..25]
gi\|91694295 - gi\|91694295\|gb\|ABE41799.1\| tocopherol cyclase [Gossypium hirsutum]	618.0	[0..26]	[438..46]
gi\|23130125, gi\|... - gi\|23130125\|ref\|ZP_00111944.1\| hypothetical protein Npun02000631 [Nostoc punctiforme PCC 73102], gi\|...	525.0	[0..67]	[453..4]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIRSLIVSM NPNLSSFELS RPVSPLTRSL VPFRSTKLVP RSISRVSASI STPNSETDKI  60
   61 SVKPVYVPTS PNRELRTPHS GYHFDGTPRK FFEGWYFRVS IPEKRESFCF MYSVENPAFR 120
  121 QSLSPLEVAL YGPRFTGVGA QILGANDKYL CQYEQDSHNF WGDRHELVLG NTFSAVPGAK 180
  181 APNKEVPPEE FNRRVSEGFQ ATPFWHQGHI CDDGRT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [217-365]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYAETVKSAR WEYSTRPVYG WGDVGAKQKS TAGWPAAFPV FEPHWQICMA GGLSTGWIEW  60
   61 GGERFEFRDA PSYSEKNWGG GFPRKWFWVQ CNVFEGATGE VALTAGGGLR QLPGLTETYE 120
  121 NAALVCVHYD GKMYEFVPWN GVVRWEMSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [366-488]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WGYWYITAEN ENHVVELEAR TNEAGTPLRA PTTEVGLATA CRDSCYGELK LQIWERLYDG  60
   61 SKGKVILETK SSMAAVEIGG GPWFGTWKGD TSNTPELLKQ ALQVPLDLES ALGLVPFFKP 120
  121 PGL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits