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View Structure Prediction Details

Protein: THN21_ARATH
Organism: Arabidopsis thaliana
Length: 134 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THN21_ARATH.

Description E-value Query
Range
Subject
Range
gi|1076463, gi|8... - gi|802168|gb|AAB33009.1| crambin precursor=thionin variant Thi2Ca10 [Crambe abyssinica, seeds, Pepti...
173.0 [0..1] [128..1]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGRILILSL LIMSLVMAQV QVEAKICCPS NQARNGYSVC RIRFSKGRCM QVSGCQNSDT  60
   61 CPRGWVNAIL ENSADATNEH CKLGCETSVC GAMNTLQNSD ASEIVNGASE QCAKGCSIFC 120
  121 TKSYVVPPGP PKLL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.471 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.436 a.7.1 Spectrin repeat
View Download 0.296 a.47.2 t-snare proteins
View Download 0.284 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.278 a.24.10 Histidine-containing phosphotransfer domain, HPT domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle