| Protein: | PPD3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 247 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPD3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
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284.0 | [0..1] | [247..1] |
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269.0 | [0..1] | [246..1] |
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268.0 | [0..1] | [246..1] |
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267.0 | [0..2] | [246..3] |
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262.0 | [0..1] | [246..1] |
|
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261.0 | [0..1] | [246..1] |
|
Region A: Residues: [1-85] |
1 11 21 31 41 51
| | | | | |
1 MAAISPWLSS PQSFSNPRVT ITDSRRCSSI SAAISVLDSS NEEQHRISSR DHVGMKRRDV 60
61 MLQIASSVFF LPLAISPAFA ETNAS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.677 | a.7.16 | Description not found. |
| View | Download | 0.599 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.588 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.529 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.529 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.516 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.516 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.502 | a.2.3 | Chaperone J-domain |
| View | Download | 0.423 | a.3.1 | Cytochrome c |
| View | Download | 0.419 | a.4.3 | ARID-like |
|
Region A: Residues: [86-247] |
1 11 21 31 41 51
| | | | | |
1 EAFRVYTDET NKFEISIPQD WQVGQAEPNG FKSITAFYPQ ETSTSNVSIA ITGLGPDFTR 60
61 MESFGKVEAF AETLVSGLDR SWQKPVGVTA KLIDSRASKG FYYIEYTLQN PGEARKHLYS 120
121 AIGMATNGWY NRLYTVTGQF TDEESAEQSS KIQKTVKSFR FI
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| Detection Method: | |
| Confidence: | 51.0 |
| Match: | 1v2bA |
| Description: | Crystal Structure of PsbP Protein in the Oxygen-Evolving Complex of Photosystem II from Higher Plants |
Matching Structure (courtesy of the PDB): |
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