YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SUVH6_ARATH
Organism: Arabidopsis thaliana
Length: 790 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUVH6_ARATH.

Description E-value Query
Range
Subject
Range
gi|17529178 - gi|17529178|gb|AAL38815.1| putative mammalian MHC III region protein G9a [Arabidopsis thaliana]
811.0 [0..1] [790..1]

Back

Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMGVMENLM VHTEISKVKS QSNGEVEKRG VSVLENGGVC KLDRMSGLKF KRRKVFAVRD  60
   61 FPPGCGSRAM EVKIACENGN VVEDVKVVES LVKEEESLGQ RDASENVSDI RMAEPVEVQP 120
  121 LRICLPGGDV VRDLSVTAGD ECSNSEQIVA GSGVSSSSGT ENIVRDIVVY ADESSLGMDN 180
  181 LDQT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [185-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPLEIEMSDV AVAKPRLVAG RKKAKKGIAC HSSLKVVSRE FGEGSRKKKS KKNLYWRDRE  60
   61 SLDSPEQLRI LGVGTSSGSS SGDSSRNKVK ETLRLFHGVC RKILQEDE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 2e6sA
Description: No description for 2e6sA was found.

Predicted Domain #3
Region A:
Residues: [293-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKPEDQRRKG KGLRIDFEAS TILKRNGKFL NSGVHILGEV PGVEVGDEFQ YRMELNILGI  60
   61 HKPSQAGIDY MKYGKAKVAT SIVASGGYDD HLDNSDVLTY TGQGGNVMQV KKKGEELKEP 120
  121 EDQKLITGNL ALATSIEKQT PVRVIRGKHK STHDKSKGGN YVYDGLYLVE KYWQQVGSHG 180
  181 MNVFKFQLRR IPG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [486-790]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPELSWVEVK KSKSKYREGL CKLDISEGKE QSPISAVNEI DDEKPPLFTY TVKLIYPDWC  60
   61 RPVPPKSCCC TTRCTEAEAR VCACVEKNGG EIPYNFDGAI VGAKPTIYEC GPLCKCPSSC 120
  121 YLRVTQHGIK LPLEIFKTKS RGWGVRCLKS IPIGSFICEY VGELLEDSEA ERRIGNDEYL 180
  181 FDIGNRYDNS LAQGMSELML GTQAGRSMAE GDESSGFTID AASKGNVGRF INHSCSPNLY 240
  241 AQNVLYDHED SRIPHVMFFA QDNIPPLQEL CYDYNYALDQ VRDSKGNIKQ KPCFCGAAVC 300
  301 RRRLY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.221849
Match: 2igqA
Description: No description for 2igqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle