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View Structure Prediction Details

Protein: SUVH5_ARATH
Organism: Arabidopsis thaliana
Length: 794 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUVH5_ARATH.

Description E-value Query
Range
Subject
Range
gi|17529178 - gi|17529178|gb|AAL38815.1| putative mammalian MHC III region protein G9a [Arabidopsis thaliana]
491.0 [0..1] [794..10]
gi|22121718, gi|... - gi|22121718|gb|AAM89288.1| SET domain-containing protein SET104 [Zea mays], gi|162458104|ref|NP_0011...
489.0 [0..3] [794..101]
gi|222632057, gi... - gi|50931865|ref|XP_475460.1| 'unknown protein, conatins SET domain' [Oryza sativa (japonica cultivar...
466.0 [0..152] [792..23]
gi|48927668 - gi|48927668|gb|AAT47546.1| SET domain protein [Triticum aestivum]
456.0 [0..150] [792..76]
gi|125534933 - gi|125534933|gb|EAY81481.1| hypothetical protein OsI_035440 [Oryza sativa (indica cultivar-group)]
gi|13517761 - gi|13517761|gb|AAK28975.1|AF344453_1 SET1 [Oryza sativa]
456.0 [0..127] [791..114]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHSESSILS SLRGGDGGGI PCSKDELAIN GSYTDPMGRR KSKRFKVAAE SEFSPDFGSI  60
   61 TRQLRSRRMQ KEFTVETYET RNVSDVCVLS SQADVELIPG EIVAERDSFK SVDCNDMSVG 120
  121 LTEGAESLGV NMQEPMKDRN MPENTSEQNM VEVHPPSISL PE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [163-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDMMGSVCRK SITGTKELHG RTISVGRDLS PNMGSKFSKN GKTAKRSISV EEENLVLEKS  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [223-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSGDHLGPSP EVLELEKSEV WIITDKGVVM PSPVKPSEKR NGDYGEGSMR KNSERVALDK  60
   61 KRLASKFRLS NGGLPSCSSS GD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.221849
Match: 2e6sA
Description: No description for 2e6sA was found.

Predicted Domain #4
Region A:
Residues: [305-544]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SARYKVKETM RLFHETCKKI MQEEEARPRK RDGGNFKVVC EASKILKSKG KNLYSGTQII  60
   61 GTVPGVEVGD EFQYRMELNL LGIHRPSQSG IDYMKDDGGE LVATSIVSSG GYNDVLDNSD 120
  121 VLIYTGQGGN VGKKKNNEPP KDQQLVTGNL ALKNSINKKN PVRVIRGIKN TTLQSSVVAK 180
  181 NYVYDGLYLV EEYWEETGSH GKLVFKFKLR RIPGQPELPW KEVAKSKKSE FRDGLCNVDI 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [545-794]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEGKETLPIC AVNNLDDEKP PPFIYTAKMI YPDWCRPIPP KSCGCTNGCS KSKNCACIVK  60
   61 NGGKIPYYDG AIVEIKPLVY ECGPHCKCPP SCNMRVSQHG IKIKLEIFKT ESRGWGVRSL 120
  121 ESIPIGSFIC EYAGELLEDK QAESLTGKDE YLFDLGDEDD PFTINAAQKG NIGRFINHSC 180
  181 SPNLYAQDVL YDHEEIRIPH IMFFALDNIP PLQELSYDYN YKIDQVYDSN GNIKKKFCYC 240
  241 GSAECSGRLY 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.154902
Match: 2o8jA
Description: No description for 2o8jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle